{"id":2513,"date":"2013-01-10T11:47:00","date_gmt":"2013-01-10T16:47:00","guid":{"rendered":"http:\/\/blogs.edf.org\/nanotechnology\/?p=2513"},"modified":"2016-03-23T14:20:28","modified_gmt":"2016-03-23T19:20:28","slug":"variety-is-the-spice-of-accurate-chemical-testing","status":"publish","type":"post","link":"https:\/\/blogs.edf.org\/health\/2013\/01\/10\/variety-is-the-spice-of-accurate-chemical-testing\/","title":{"rendered":"Variety is the spice of \u2026 accurate chemical testing"},"content":{"rendered":"

Rachel Shaffer<\/em> is a research assistant.\u00a0 Jennifer McPartland, Ph.D.<\/em><\/a>, <\/em>is a Health Scientist.<\/em><\/p>\n

There has been a lot of buzz in recent years about the federal government\u2019s new chemical testing initiatives, <\/span>ToxCast<\/span><\/a> and <\/span>Tox21<\/span><\/a> (see, for example, these articles in <\/span>Scientific American<\/span><\/a> and the <\/span>New York Times<\/span><\/a>).\u00a0 These programs are developing <\/span>high-throughput (HT) in-vitro<\/em> testing<\/span><\/a> to evaluate\u2014and ultimately predict\u2014the biological effects of chemicals. \u00a0In contrast to the relatively slow pace of traditional animal testing, ToxCast and Tox21 use sophisticated robots to rapidly test thousands of chemicals at a time. As a result, they hold the potential<\/em> to more efficiently fill enormous gaps in available health data, predict adverse effects, and shed light on exactly how chemicals interact and interfere with our biology. (For more on these potential benefits, see <\/span>Section 5<\/span><\/a> of <\/span>EDF\u2019s Chemical Testing Primer<\/span><\/a>). <\/span><\/span><\/span><\/p>\n

Yet, among the key challenges that these new methods must address is one that traditional, animal-based methods have faced for decades: how can laboratory testing adequately account for the high degree of variability in the human population? The latest research suggests the exciting possibility that genetic diversity, at least, may be able to be incorporated into emerging HT in vitro<\/em> approaches.\u00a0\u00a0<\/span><\/span><\/span><\/p>\n

In the real world, individual susceptibility to chemicals is mediated by a variety of factors, such as our genes, the expression of our genes (referred to as our <\/span>epigenome<\/span><\/a>)<\/span><\/span>, gender, age, pre-existing health conditions, and more. \u00a0However, neither <\/span><\/span><\/span>homogenous, inbred laboratory animals<\/span><\/a> nor the genetically identical cell lines that are typically used in the ToxCast and Tox21 programs sufficiently capture these critical differences. \u00a0<\/span><\/span><\/span><\/p>\n

Many scientists and risk assessors have recognized this challenge, and an <\/span>article<\/span><\/a> published last year in Toxicological Sciences<\/em> (Lock et al<\/em>., 2012) presents one attempt to address this issue by testing chemicals on a large number of genetically distinct cell lines.\u00a0 The researchers found that genetically diverse cell lines can, in fact, respond differently to the same chemical exposure.\u00a0 Their work also illustrates the feasibility of incorporating this type of diversity into HT in vitro<\/em> chemical testing. <\/span><\/span><\/span><\/p>\n

In this study, 81 different human <\/span>lymphoblast cell<\/span><\/a> lines (immature cells that will later develop into mature white blood cells that originate in bone marrow) \u00a0were exposed to 240 chemical compounds and then evaluated for two adverse effects: <\/span>cytotoxicity<\/span><\/a> (toxicity to cells) and <\/span>apoptosis<\/span><\/a>\u00a0(self-induced cell death; in other words, programmed cell \u201csuicide\u201d).\u00a0 Some of the chemicals produced the same patterns of cytotoxicity and apoptosis in all of the cell lines, while other chemicals showed no effects in any of the cell lines. \u00a0Most interesting, however, was that some chemicals caused different levels of cytotoxicity and apoptosis across the set of genetically-distinct cell lines\u2014a testament to the strong influence of genetics on toxicity. \u00a0In some cases, a single chemical caused severe apoptosis in certain cell lines, low levels of apoptosis in other cell lines, and no apoptosis in yet another set of cell lines. <\/span><\/span><\/span><\/p>\n

Because the ToxCast and Tox21 programs do not currently incorporate genetically diverse cells into routine HT testing, differences such as those described above may go undetected. This is especially problematic if results obtained from a single cell line are assumed to represent the entire population or if the lack of diversity is not expressly noted as a serious limitation in any communication or use of the data. <\/span><\/span><\/span><\/p>\n

Furthermore, if these methods are used to prioritize a chemical or to inform a risk assessment, then individuals who may be more susceptible to an exposure may be inadequately protected.\u00a0 \u00a0Uncertainty factors are commonly used in the practice of risk assessment to account for the limitations of traditional animal testing, including the lack of genetic diversity among highly inbred laboratory animals.\u00a0 It follows that if HT testing approaches utilize only a few cells lines, analogous uncertainty factors may be needed.<\/span><\/span><\/span><\/p>\n

But we may not have to resort to the use of such uncertainty factors.\u00a0 This new study not only demonstrates the importance of considering individual genetic differences in in vitro<\/em> testing but also its feasibility. \u00a0The results obtained were generally quite reproducible and mirrored results from previous HT toxicity testing of the same chemicals by the <\/span>National Toxicology Program<\/span><\/a>. This consistency, as well as the availability of many genetically distinct human cell lines made possible through recently established <\/span>international cell repository programs<\/span><\/a>, may mean that genetic diversity could be integrated into ToxCast and Tox21 in the near future. <\/span><\/span><\/span><\/p>\n

Yet, as always, questions and challenges remain. While we clearly need to incorporate genetic diversity into toxicity testing, how do we decide how much diversity is \u201cenough\u201d? Each one of us is distinct, but we can\u2019t possibly all be represented in each chemical test. \u00a0So, then, what constitutes a representative sample of the genetic diversity of the human population?<\/span><\/span><\/span><\/p>\n

Another question relates to what types of cells should be used in HT testing. Some chemicals exert their effects on specific \u201ctarget organs,\u201d while others exhibit more general \u201csystemic\u201d toxicity. \u00a0In most cases, to fully understand the potential hazards of a chemical, it will be important to test it on a variety of cell types representing different organs with their own set of potential adverse effects. The study we describe in this post used lymphoblast cells; how might the results have differed if liver or mammary gland cells had been used instead? \u00a0How should we decide how many and which cell types to include in testing? <\/span><\/span><\/span><\/p>\n

Finally, as noted above, genetic diversity is but one of many factors that contribute to varying susceptibilities in the population. How can we also begin to address the individual differences in our epigenome, gender, age, and pre-existing health conditions?\u00a0 Should we apply uncertainty factors to HT data in the way we have done for data derived from traditional animal testing?\u00a0 Or, can we attempt to incorporate these additional dimensions of diversity directly into HT testing? <\/span><\/span><\/span><\/p>\n

Clearly, we have a long way to go to reach an optimal system for comprehensive chemical testing. ToxCast, Tox21, and other EPA <\/span>Computational Toxicology (CompTox) programs<\/span><\/a>, are important steps towards building this system. But as with all testing approaches, there are important <\/span>challenges and limitations<\/span><\/a>. <\/span>Scientists are continuing to explore ways in which new testing technology can better incorporate genetic diversity<\/span>\u00a0<\/span>(see, e.g., Zeise et al., 2013<\/a>), but it is also essential that all stakeholders \u2013 including\u00a0 those from the public interest community that represent the interests of subpopulations who may be more susceptible to chemical exposures \u2013 engage in the development and application of EPA\u2019s new testing approaches. <\/span><\/span><\/span><\/p>\n

For additional information on EPA\u2019s chemical testing programs, please visit these EDF webpages: <\/span><\/span><\/span><\/p>\n

– <\/span>Chemical Testing in the 21<\/span>st<\/span><\/sup> Century: A Primer<\/span><\/span><\/span><\/a><\/p>\n

– <\/span>Chemical Testing in the 21<\/span>st<\/span><\/sup> Century: Webinar Series<\/span><\/span><\/span><\/a><\/p>\n

– <\/span>Chemical Testing in the 21<\/span>st<\/span><\/sup> Century: Additional Resources<\/span><\/span><\/span><\/a><\/p>\n

\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

Rachel Shaffer is a research assistant.\u00a0 Jennifer McPartland, Ph.D., is a Health Scientist. There has been a lot of buzz in recent years about the federal government\u2019s new chemical testing initiatives, ToxCast and Tox21 (see, for example, these articles in Scientific American and the New York Times).\u00a0 These programs are developing high-throughput (HT) in-vitro testing …<\/p>\n","protected":false},"author":11089,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[56094,5009],"tags":[39167,39169,39193,5017,91636,91637,39991],"coauthors":[],"class_list":["post-2513","post","type-post","status-publish","format-standard","hentry","category-new-testing-methods","category-health-science","tag-computational-toxicology","tag-in-vitro","tag-prioritization","tag-risk-assessment","tag-tox21","tag-toxcast","tag-vulnerable-populations"],"acf":[],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/posts\/2513","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/users\/11089"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/comments?post=2513"}],"version-history":[{"count":0,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/posts\/2513\/revisions"}],"wp:attachment":[{"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/media?parent=2513"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/categories?post=2513"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/tags?post=2513"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/blogs.edf.org\/health\/wp-json\/wp\/v2\/coauthors?post=2513"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}